# readr ## Overview The goal of readr is to provide a fast and friendly way to read rectangular data from delimited files, such as comma-separated values (CSV) and tab-separated values (TSV). It is designed to parse many types of data found in the wild, while providing an informative problem report when parsing leads to unexpected results. If you are new to readr, the best place to start is the [data import chapter](https://r4ds.hadley.nz/data-import) in R for Data Science. ## Installation ``` r # The easiest way to get readr is to install the whole tidyverse: install.packages("tidyverse") # Alternatively, install just readr: install.packages("readr") ``` ## Cheatsheet [![thumbnail of data import cheatsheet](https://raw.githubusercontent.com/rstudio/cheatsheets/main/pngs/thumbnails/data-import-cheatsheet-thumbs.png)](https://github.com/rstudio/cheatsheets/blob/main/data-import.pdf) ## Usage readr is part of the core tidyverse, so you can load it with: ``` r library(tidyverse) #> ── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ── #> ✔ dplyr 1.2.0 ✔ readr 2.1.6.9000 #> ✔ forcats 1.0.1 ✔ stringr 1.6.0 #> ✔ ggplot2 4.0.2 ✔ tibble 3.3.1 #> ✔ lubridate 1.9.4 ✔ tidyr 1.3.2 #> ✔ purrr 1.2.1 #> ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ── #> ✖ dplyr::filter() masks stats::filter() #> ✖ dplyr::lag() masks stats::lag() #> ℹ Use the conflicted package () to force all conflicts to become errors ``` Of course, you can also load readr as an individual package: ``` r library(readr) ``` To read a rectangular dataset with readr, you combine two pieces: a function that parses the lines of the file into individual fields and a column specification. readr supports the following file formats with these `read_*()` functions: - [`read_csv()`](https://readr.tidyverse.org/reference/read_delim.md): comma-separated values (CSV) - [`read_tsv()`](https://readr.tidyverse.org/reference/read_delim.md): tab-separated values (TSV) - [`read_csv2()`](https://readr.tidyverse.org/reference/read_delim.md): semicolon-separated values with `,` as the decimal mark - [`read_delim()`](https://readr.tidyverse.org/reference/read_delim.md): delimited files (CSV and TSV are important special cases) - [`read_fwf()`](https://readr.tidyverse.org/reference/read_fwf.md): fixed-width files - [`read_table()`](https://readr.tidyverse.org/reference/read_table.md): whitespace-separated files - [`read_log()`](https://readr.tidyverse.org/reference/read_log.md): web log files A column specification describes how each column should be converted from a character vector to a specific data type (e.g. character, numeric, datetime, etc.). In the absence of a column specification, readr will guess column types from the data. [`vignette("column-types")`](https://readr.tidyverse.org/articles/column-types.md) gives more detail on how readr guesses the column types. Column type guessing is very handy, especially during data exploration, but it’s important to remember these are *just guesses*. As any data analysis project matures past the exploratory phase, the best strategy is to provide explicit column types. The following example loads a sample file bundled with readr and guesses the column types: ``` r (chickens <- read_csv(readr_example("chickens.csv"))) #> Rows: 5 Columns: 4 #> ── Column specification ──────────────────────────────────────────────────────── #> Delimiter: "," #> chr (3): chicken, sex, motto #> dbl (1): eggs_laid #> #> ℹ Use `spec()` to retrieve the full column specification for this data. #> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. #> # A tibble: 5 × 4 #> chicken sex eggs_laid motto #> #> 1 Foghorn Leghorn rooster 0 That's a joke, ah say, that's a jok… #> 2 Chicken Little hen 3 The sky is falling! #> 3 Ginger hen 12 Listen. We'll either die free chick… #> 4 Camilla the Chicken hen 7 Bawk, buck, ba-gawk. #> 5 Ernie The Giant Chicken rooster 0 Put Captain Solo in the cargo hold. ``` Note that readr prints the column types – the *guessed* column types, in this case. This is useful because it allows you to check that the columns have been read in as you expect. If they haven’t, that means you need to provide the column specification. This sounds like a lot of trouble, but luckily readr affords a nice workflow for this. Use [`spec()`](https://readr.tidyverse.org/reference/spec.md) to retrieve the (guessed) column specification from your initial effort. ``` r spec(chickens) #> cols( #> chicken = col_character(), #> sex = col_character(), #> eggs_laid = col_double(), #> motto = col_character() #> ) ``` Now you can copy, paste, and tweak this, to create a more explicit readr call that expresses the desired column types. Here we express that `sex` should be a factor with levels `rooster` and `hen`, in that order, and that `eggs_laid` should be integer. ``` r chickens <- read_csv( readr_example("chickens.csv"), col_types = cols( chicken = col_character(), sex = col_factor(levels = c("rooster", "hen")), eggs_laid = col_integer(), motto = col_character() ) ) chickens #> # A tibble: 5 × 4 #> chicken sex eggs_laid motto #> #> 1 Foghorn Leghorn rooster 0 That's a joke, ah say, that's a jok… #> 2 Chicken Little hen 3 The sky is falling! #> 3 Ginger hen 12 Listen. We'll either die free chick… #> 4 Camilla the Chicken hen 7 Bawk, buck, ba-gawk. #> 5 Ernie The Giant Chicken rooster 0 Put Captain Solo in the cargo hold. ``` [`vignette("readr")`](https://readr.tidyverse.org/articles/readr.md) gives an expanded introduction to readr. ## Editions readr got a new parsing engine in version 2.0.0 (released July 2021). In this so-called second edition, readr calls [`vroom::vroom()`](https://vroom.tidyverse.org/reference/vroom.html), by default. The parsing engine in readr versions prior to 2.0.0 is now called the first edition. If you’re using readr \>= 2.0.0, you can still access first edition parsing via the functions `with_edition(1, ...)` and `local_edition(1)`. And, obviously, if you’re using readr \< 2.0.0, you will get first edition parsing, by definition, because that’s all there is. We will continue to support the first edition for a number of releases, but the overall goal is to make the second edition uniformly better than the first. Therefore the plan is to eventually deprecate and then remove the first edition code. New code and actively-maintained code should use the second edition. The workarounds `with_edition(1, ...)` and `local_edition(1)` are offered as a pragmatic way to patch up legacy code or as a temporary solution for infelicities identified as the second edition matures. ## Alternatives There are two main alternatives to readr: base R and data.table’s `fread()`. The most important differences are discussed below. ### Base R Compared to the corresponding base functions, readr functions: - Use a consistent naming scheme for the parameters (e.g. `col_names` and `col_types` not `header` and `colClasses`). - Are generally much faster (up to 10x-100x) depending on the dataset. - Leave strings as is by default, and automatically parse common date/time formats. - Have a helpful progress bar if loading is going to take a while. - All functions work exactly the same way regardless of the current locale. To override the US-centric defaults, use [`locale()`](https://readr.tidyverse.org/reference/locale.md). ### data.table and `fread()` [data.table](https://github.com/Rdatatable/data.table) has a function similar to [`read_csv()`](https://readr.tidyverse.org/reference/read_delim.md) called `fread()`. Compared to `fread()`, readr functions: - Are sometimes slower, particularly on numeric heavy data. - Can automatically guess some parameters, but basically encourage explicit specification of, e.g., the delimiter, skipped rows, and the header row. - Follow tidyverse-wide conventions, such as returning a tibble, a standard approach for column name repair, and a common mini-language for column selection. ## Acknowledgements Thanks to: - [Joe Cheng](https://github.com/jcheng5) for showing me the beauty of deterministic finite automata for parsing, and for teaching me why I should write a tokenizer. - [JJ Allaire](https://github.com/jjallaire) for helping me come up with a design that makes very few copies, and is easy to extend. - [Dirk Eddelbuettel](http://dirk.eddelbuettel.com) for coming up with the name! # Package index ## Read rectangular files These functions parse rectangular files (like csv or fixed-width format) into tibbles. They specify the overall structure of the file, and how each line is divided up into fields. - [`read_delim()`](https://readr.tidyverse.org/reference/read_delim.md) [`read_csv()`](https://readr.tidyverse.org/reference/read_delim.md) [`read_csv2()`](https://readr.tidyverse.org/reference/read_delim.md) [`read_tsv()`](https://readr.tidyverse.org/reference/read_delim.md) : Read a delimited file (including CSV and TSV) into a tibble - [`read_fwf()`](https://readr.tidyverse.org/reference/read_fwf.md) [`fwf_empty()`](https://readr.tidyverse.org/reference/read_fwf.md) [`fwf_widths()`](https://readr.tidyverse.org/reference/read_fwf.md) [`fwf_positions()`](https://readr.tidyverse.org/reference/read_fwf.md) [`fwf_cols()`](https://readr.tidyverse.org/reference/read_fwf.md) : Read a fixed-width file into a tibble - [`read_log()`](https://readr.tidyverse.org/reference/read_log.md) : Read common/combined log file into a tibble - [`read_table()`](https://readr.tidyverse.org/reference/read_table.md) : Read whitespace-separated columns into a tibble ## Column specification The column specification describes how each column is parsed from a character vector in to a more specific data type. readr does make an educated guess about the type of each column, but you’ll need override those guesses when it gets them wrong. - [`problems()`](https://readr.tidyverse.org/reference/problems.md) [`stop_for_problems()`](https://readr.tidyverse.org/reference/problems.md) : Retrieve parsing problems - [`cols()`](https://readr.tidyverse.org/reference/cols.md) [`cols_only()`](https://readr.tidyverse.org/reference/cols.md) : Create column specification - [`cols_condense()`](https://readr.tidyverse.org/reference/spec.md) [`spec()`](https://readr.tidyverse.org/reference/spec.md) : Examine the column specifications for a data frame - [`spec_delim()`](https://readr.tidyverse.org/reference/spec_delim.md) [`spec_csv()`](https://readr.tidyverse.org/reference/spec_delim.md) [`spec_csv2()`](https://readr.tidyverse.org/reference/spec_delim.md) [`spec_tsv()`](https://readr.tidyverse.org/reference/spec_delim.md) [`spec_table()`](https://readr.tidyverse.org/reference/spec_delim.md) : Generate a column specification ## Column parsers Column parsers define how a single column is parsed, or how to parse a single vector. Each parser comes in two forms: `parse_xxx()` which is used to parse vectors that already exist in R and `col_xxx()` which is used to parse vectors as they are loaded by a `read_xxx()` function. - [`parse_logical()`](https://readr.tidyverse.org/reference/parse_atomic.md) [`parse_integer()`](https://readr.tidyverse.org/reference/parse_atomic.md) [`parse_double()`](https://readr.tidyverse.org/reference/parse_atomic.md) [`parse_character()`](https://readr.tidyverse.org/reference/parse_atomic.md) [`col_logical()`](https://readr.tidyverse.org/reference/parse_atomic.md) [`col_integer()`](https://readr.tidyverse.org/reference/parse_atomic.md) [`col_double()`](https://readr.tidyverse.org/reference/parse_atomic.md) [`col_character()`](https://readr.tidyverse.org/reference/parse_atomic.md) : Parse logicals, integers, and reals - [`parse_datetime()`](https://readr.tidyverse.org/reference/parse_datetime.md) [`parse_date()`](https://readr.tidyverse.org/reference/parse_datetime.md) [`parse_time()`](https://readr.tidyverse.org/reference/parse_datetime.md) [`col_datetime()`](https://readr.tidyverse.org/reference/parse_datetime.md) [`col_date()`](https://readr.tidyverse.org/reference/parse_datetime.md) [`col_time()`](https://readr.tidyverse.org/reference/parse_datetime.md) : Parse date/times - [`parse_factor()`](https://readr.tidyverse.org/reference/parse_factor.md) [`col_factor()`](https://readr.tidyverse.org/reference/parse_factor.md) : Parse factors - [`parse_guess()`](https://readr.tidyverse.org/reference/parse_guess.md) [`col_guess()`](https://readr.tidyverse.org/reference/parse_guess.md) [`guess_parser()`](https://readr.tidyverse.org/reference/parse_guess.md) : Parse using the "best" type - [`parse_number()`](https://readr.tidyverse.org/reference/parse_number.md) [`col_number()`](https://readr.tidyverse.org/reference/parse_number.md) : Parse numbers, flexibly - [`col_skip()`](https://readr.tidyverse.org/reference/col_skip.md) : Skip a column ## Locale controls The “locale” controls all options that vary from country-to-country or language-to-language. This includes things like the character used as the decimal mark, the names of days of the week, and the encoding. See [`vignette("locales")`](https://readr.tidyverse.org/articles/locales.md) for more details. - [`locale()`](https://readr.tidyverse.org/reference/locale.md) [`default_locale()`](https://readr.tidyverse.org/reference/locale.md) : Create locales - [`date_names()`](https://readr.tidyverse.org/reference/date_names.md) [`date_names_lang()`](https://readr.tidyverse.org/reference/date_names.md) [`date_names_langs()`](https://readr.tidyverse.org/reference/date_names.md) : Create or retrieve date names ## Write rectangular files Despite its name, readr also provides a number of functions to **write** data frames to disk, or to convert them to in-memory strings. - [`format_delim()`](https://readr.tidyverse.org/reference/format_delim.md) [`format_csv()`](https://readr.tidyverse.org/reference/format_delim.md) [`format_csv2()`](https://readr.tidyverse.org/reference/format_delim.md) [`format_tsv()`](https://readr.tidyverse.org/reference/format_delim.md) : Convert a data frame to a delimited string - [`write_delim()`](https://readr.tidyverse.org/reference/write_delim.md) [`write_csv()`](https://readr.tidyverse.org/reference/write_delim.md) [`write_csv2()`](https://readr.tidyverse.org/reference/write_delim.md) [`write_excel_csv()`](https://readr.tidyverse.org/reference/write_delim.md) [`write_excel_csv2()`](https://readr.tidyverse.org/reference/write_delim.md) [`write_tsv()`](https://readr.tidyverse.org/reference/write_delim.md) : Write a data frame to a delimited file ## Readr editions readr supports two editions of parser. Version one is a single threaded eager parser that readr used by default from its first release to version 1.4.0. Version two is a multi-threaded lazy parser used by default from readr 2.0.0 onwards. - [`with_edition()`](https://readr.tidyverse.org/reference/with_edition.md) [`local_edition()`](https://readr.tidyverse.org/reference/with_edition.md) : Temporarily change the active readr edition - [`edition_get()`](https://readr.tidyverse.org/reference/edition_get.md) : Retrieve the currently active edition ## Low-level IO and debugging tools These functions can be used with non-rectangular files, binary data, and to help debug rectangular files that fail to parse. - [`read_file()`](https://readr.tidyverse.org/reference/read_file.md) [`read_file_raw()`](https://readr.tidyverse.org/reference/read_file.md) [`write_file()`](https://readr.tidyverse.org/reference/read_file.md) : Read/write a complete file - [`read_lines()`](https://readr.tidyverse.org/reference/read_lines.md) [`read_lines_raw()`](https://readr.tidyverse.org/reference/read_lines.md) [`write_lines()`](https://readr.tidyverse.org/reference/read_lines.md) : Read/write lines to/from a file - [`read_rds()`](https://readr.tidyverse.org/reference/read_rds.md) [`write_rds()`](https://readr.tidyverse.org/reference/read_rds.md) : Read/write RDS files. - [`read_builtin()`](https://readr.tidyverse.org/reference/read_builtin.md) : Read built-in object from package - [`count_fields()`](https://readr.tidyverse.org/reference/count_fields.md) : Count the number of fields in each line of a file - [`guess_encoding()`](https://readr.tidyverse.org/reference/encoding.md) : Guess encoding of file - [`type_convert()`](https://readr.tidyverse.org/reference/type_convert.md) : Re-convert character columns in existing data frame - [`readr_example()`](https://readr.tidyverse.org/reference/readr_example.md) : Get path to readr example - [`clipboard()`](https://readr.tidyverse.org/reference/clipboard.md) : Returns values from the clipboard - [`show_progress()`](https://readr.tidyverse.org/reference/show_progress.md) : Determine whether progress bars should be shown - [`readr_threads()`](https://readr.tidyverse.org/reference/readr_threads.md) : Determine how many threads readr should use when processing - [`should_show_types()`](https://readr.tidyverse.org/reference/should_show_types.md) : Determine whether column types should be shown - [`should_read_lazy()`](https://readr.tidyverse.org/reference/should_read_lazy.md) : Determine whether to read a file lazily # Articles ### All vignettes - [Column type](https://readr.tidyverse.org/articles/column-types.md): - [Locales](https://readr.tidyverse.org/articles/locales.md): - [Introduction to readr](https://readr.tidyverse.org/articles/readr.md):